Two papers and a prize at iV 2018!

I presented my works on rainbow boxes at the Information Visualisation (iV) 2018 conference.

The first paper, "A new diagram for amino acids: User study comparing rainbow boxes to Venn/Euler diagram", is available here and the presentation there.

The second paper, "Visualizing symmetric square matrices with rainbow boxes: methods and application to character co-occurrence matrices in literary texts", is available here and the presentation there. And this second paper win a Best Paper award!

New journal paper "Using preference learning for detecting inconsistencies in clinical practice guidelines"

I have published a new journal paper:

journalif [j40] Tsopra R, Lamy JB, Sedki K. Using preference learning for detecting inconsistencies in clinical practice guidelines: methods and application to antibiotherapy. Artificial Intelligence in Medicine 2018;89:24-33, IMIA Yearbook 2019 best paper in decision support

Presentation at MIE 2018 on VCM icons

I presented my works about the design of a mapping between VCM icons and the MedDRA terminology at the MIE 2018 conference.

The paper "Combining Semantic and Lexical Methods for Mapping MedDRA to VCM Icons" is abailable here and the presentation there.

New chapter "Artificial Feeding Birds (AFB)"

I have published a new book chapter:

other [x18] Lamy JB. Artificial Feeding Birds (AFB): a new metaheuristic inspired by the behavior of pigeons. Advances in nature-inspired computing and applications 2019;43-60, Springer

New journal paper "Formalization of the semantics of iconic languages"

I have published a new journal paper:

journalif [j37] Lamy JB, Soualmia LF. Formalization of the semantics of iconic languages: An ontology-based method and four semantic-powered applications. Knowledge-Based Systems 2017;135:159-179

New journal paper "Rainbow boxes"

I have published a new journal paper:

journalif [j36] Lamy JB, Berthelot H, Capron C, Favre M. Rainbow boxes: a new technique for overlapping set visualization and two applications in the biomedical domain. Journal of Visual Language and Computing 2017;43:71-82

New journal paper "Owlready"

I have published a new journal paper:

journalif [j35] Lamy JB. Owlready: Ontology-oriented programming in Python with automatic classification and high level constructs for biomedical ontologies. Artificial Intelligence in Medicine 2017;80:11-28

New journal paper "Using visual analytics for presenting comparative information on new drugs"

I have published a new journal paper:

journalif [j34] Lamy JB, Berthelot H, Favre M, Ugon A, Duclos C, Venot A. Using visual analytics for presenting comparative information on new drugs. Journal of Biomedical Informatics 2017;71:58-69

New journal paper "Formalisation de la sémantique des langages iconiques"

I have published a new journal paper:

journal [j31] Lamy JB, Soualmia LF, Duclos C, Venot A. Formalisation de la sémantique des langages iconiques : méthode à base d'ontologie et applications. Revue d’intelligence artificielle (RIA) 2016;30(5):579-606

OwlReady at the STC 2016 conference

OwlReady and ontology-oriented programming were presented at the STC 2016 conference (Special Topic Conference). The article is available online and the presentation too. Please cite it if you use OwlReady!

Ontology-Oriented Programming for Biomedical Informatics
JB Lamy.
Studies in Health Technology and Informatics 2016 ; 221:64-68

Owlready is a Python module for ontology-oriented programming. It can load OWL 2.0 ontologies and manipulate them transparently in Python.

PyMedTermino at the european medical informatics conference MIE 2005

PyMedTermino has been presented at the european medical informatics conference (MIE 2015). The article is available online and the presentation here. Please cite it if you use PyMedTermino!

PyMedTermino: an open-source generic API for advanced terminology services.
JB Lamy, A Venot, C Duclos.
Studies in Health Technology and Informatics 2015 ; 210:924-928

PyMedTermino (Medical Terminologies for Python) is a Python module for easy access to the main medical terminologies in Python.

New chapter "A 2014 medical informatics perspective on clinical decision support systems"

I have published a new book chapter:

other [x14] Bouaud J, Lamy JB. A 2014 medical informatics perspective on clinical decision support systems: do we hit the ceiling of effectiveness? Yearbook of medical informatics 2014;9(1):163-6

New journal paper "Toward a Formalization of the Process to Select IMIA Yearbook Best Papers"

I have published a new journal paper:

journalif [j27] Lamy JB, Séroussi B, Griffon N, Kerdelhué G, Jaulent MC, Bouaud J. Toward a Formalization of the Process to Select IMIA Yearbook Best Papers. Methods of information in medicine 2015;54(2):135-44

New chapter "Medical Vocabulary, Terminological Resources and Information Coding in the Health Domain"

I have published a new book chapter:

other [x13] Duclos C, Burgun A, Lamy JB, Landais P, Rodrigues JM, Soualmia L, Zweigenbaum P. Medical Vocabulary, Terminological Resources and Information Coding in the Health Domain. Medical Informatics, e-Health - Fundamentals and Applications 2014;11-42, Springer